{
  "_id": "6ae9c74e818c9e3ef6dbf56b",
  "Package": "GalaxyR",
  "Title": "'Galaxy' API Implementation",
  "Version": "0.1.2",
  "Authors@R": "c(\nperson(\"Julian\", \"Frey\", email = \"julian.frey@wwd.uni-freiburg.de\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7895-702X\")),\nperson(\"Zoe\", \"Schindler\", email = \"zoe.schindler@wwd.uni-freiburg.de\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-2972-1920\"))\n)",
  "Description": "On 'Galaxy' platforms like 'Galaxy Europe'\n<https://usegalaxy.eu>, many tools and workflows can run\ndirectly on a high-performance computer. 'GalaxyR' connects R\nwith 'Galaxy' platforms API <https://usegalaxy.eu/api/docs> and\nallows credential management, uploading data, invoking\nworkflows or tools, checking their status, and downloading\nresults.",
  "URL": "https://github.com/JulFrey/GalaxyR",
  "BugReports": "https://github.com/JulFrey/GalaxyR/issues",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Config/roxygen2/version": "8.0.0",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://julfrey.r-universe.dev",
  "Date/Publication": "2026-07-06 09:19:22 UTC",
  "RemoteUrl": "https://github.com/julfrey/galaxyr",
  "RemoteRef": "HEAD",
  "RemoteSha": "23af5575091f01359d46df2b8e076b937cd9eac6",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-03 10:23:20 UTC",
    "User": "root"
  },
  "Author": "Julian Frey [aut, cre] (ORCID: <https://orcid.org/0000-0001-7895-702X>),\nZoe Schindler [ctb] (ORCID: <https://orcid.org/0000-0003-2972-1920>)",
  "Maintainer": "Julian Frey <julian.frey@wwd.uni-freiburg.de>",
  "_user": "julfrey",
  "_type": "src",
  "_file": "GalaxyR_0.1.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/550994cea93d5cc34160018136b75585f936df86dfdaa0910e825e924db9ac06",
  "_filesize": 305184,
  "_sha256": "550994cea93d5cc34160018136b75585f936df86dfdaa0910e825e924db9ac06",
  "_expires": "2027-02-11T11:36:45.000Z",
  "_created": "2026-11-03T10:23:20.000Z",
  "_published": "2026-11-03T11:36:46.770Z",
  "_upstream": "https://github.com/julfrey/galaxyr",
  "_status": "success",
  "_maintainer": {
    "name": "Julian Frey",
    "email": "julian.frey@wwd.uni-freiburg.de",
    "login": "julfrey",
    "orcid": "0000-0001-7895-702X",
    "description": "",
    "uuid": 45684330
  },
  "_jobs": [
    {
      "job": 125859204009,
      "time": 90,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13223086257"
    },
    {
      "job": 125859204091,
      "time": 94,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13223375658"
    },
    {
      "job": 125859203957,
      "time": 199,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13227600471"
    },
    {
      "job": 125859203911,
      "time": 152,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13226622260"
    },
    {
      "job": 125857826886,
      "time": 170,
      "config": "source",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13221738858"
    },
    {
      "job": 125859204145,
      "time": 89,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13223445424"
    },
    {
      "job": 125859204123,
      "time": 49,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13222547145"
    },
    {
      "job": 125859204141,
      "time": 66,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13221759722"
    },
    {
      "job": 125859204071,
      "time": 66,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13222396862"
    }
  ],
  "_buildurl": "https://github.com/r-universe/julfrey/actions/runs/41618445549",
  "_commit": {
    "id": "23af5575091f01359d46df2b8e076b937cd9eac6",
    "author": "JulFrey <julian.frey@@posteo.de>",
    "committer": "JulFrey <julian.frey@@posteo.de>",
    "message": "Update news and readme\n",
    "time": 1783329562
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    }
  ],
  "_owner": "julfrey",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-02",
      "n": 7
    },
    {
      "week": "2026-03",
      "n": 3
    },
    {
      "week": "2026-04",
      "n": 7
    },
    {
      "week": "2026-05",
      "n": 5
    },
    {
      "week": "2026-08",
      "n": 4
    },
    {
      "week": "2026-16",
      "n": 2
    },
    {
      "week": "2026-17",
      "n": 2
    },
    {
      "week": "2026-27",
      "n": 6
    },
    {
      "week": "2026-28",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 6,
  "_contributors": [
    {
      "user": "zoeschindler",
      "count": 10,
      "uuid": 59600387
    },
    {
      "user": "julfrey",
      "count": 8,
      "uuid": 45684330
    }
  ],
  "_userbio": {
    "uuid": 45684330,
    "type": "user",
    "name": "Julian Frey ",
    "followers": 17
  },
  "_downloads": {
    "count": 290,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/GalaxyR"
  },
  "_devurl": "https://github.com/julfrey/galaxyr",
  "_searchresults": 2,
  "_abi": {
    "exports": [
      {
        "key": "GalaxyR::Galaxy",
        "hash": "8c767ed4c58830df"
      },
      {
        "key": "GalaxyR::generic:galaxy_delete_history",
        "hash": "974592c8364ff31e"
      },
      {
        "key": "GalaxyR::generic:galaxy_download_result",
        "hash": "abf013c613c523fe"
      },
      {
        "key": "GalaxyR::generic:galaxy_download_rocrate",
        "hash": "27d7c49921fda5ed"
      },
      {
        "key": "GalaxyR::generic:galaxy_initialize",
        "hash": "1e104225424088d5"
      },
      {
        "key": "GalaxyR::generic:galaxy_list_files",
        "hash": "daadc7e84646a9c3"
      },
      {
        "key": "GalaxyR::generic:galaxy_poll_tool",
        "hash": "4fae2ef649095205"
      },
      {
        "key": "GalaxyR::generic:galaxy_poll_workflow",
        "hash": "ddf53aea71a2424e"
      },
      {
        "key": "GalaxyR::generic:galaxy_run_tool",
        "hash": "54b75a1b9591a98e"
      },
      {
        "key": "GalaxyR::generic:galaxy_start_workflow",
        "hash": "aacec1560ca0faa5"
      },
      {
        "key": "GalaxyR::generic:galaxy_upload_ftp",
        "hash": "6c1d4158ed9e029d"
      },
      {
        "key": "GalaxyR::generic:galaxy_upload_https",
        "hash": "d23198215d27f23f"
      }
    ],
    "imports": []
  },
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GalaxyR.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/julfrey/galaxyr",
  "_realowner": "julfrey",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-02-04"
    },
    {
      "version": "0.1.1",
      "date": "2026-02-17"
    },
    {
      "version": "0.1.2",
      "date": "2026-07-06"
    }
  ],
  "_exports": [
    "galaxy",
    "galaxy_delete_dataset",
    "galaxy_delete_datasets",
    "galaxy_delete_history",
    "galaxy_download_result",
    "galaxy_download_rocrate",
    "galaxy_get_file_info",
    "galaxy_get_tool",
    "galaxy_get_tool_id",
    "galaxy_get_workflow",
    "galaxy_get_workflow_inputs",
    "galaxy_has_key",
    "galaxy_history_size",
    "galaxy_initialize",
    "galaxy_list_files",
    "galaxy_list_histories",
    "galaxy_list_invocations",
    "galaxy_list_tools",
    "galaxy_list_workflows",
    "galaxy_poll_tool",
    "galaxy_poll_workflow",
    "galaxy_print_tool_inputs",
    "galaxy_run_tool",
    "galaxy_set_credentials",
    "galaxy_start_workflow",
    "galaxy_upload_ftp",
    "galaxy_upload_https"
  ],
  "_help": [
    {
      "page": "galaxy",
      "title": "Create a Galaxy session object",
      "topics": [
        "galaxy"
      ]
    },
    {
      "page": "galaxy_delete_dataset",
      "title": "Delete a Galaxy dataset by ID",
      "topics": [
        "galaxy_delete_dataset"
      ]
    },
    {
      "page": "galaxy_delete_datasets",
      "title": "Delete multiple Galaxy datasets by ID",
      "topics": [
        "galaxy_delete_datasets"
      ]
    },
    {
      "page": "galaxy_delete_history",
      "title": "Generic for deleting a Galaxy history",
      "topics": [
        "galaxy_delete_history",
        "galaxy_delete_history,character-method",
        "galaxy_delete_history,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_download_result",
      "title": "Generic for downloading files from a history",
      "topics": [
        "galaxy_download_result",
        "galaxy_download_result,character-method",
        "galaxy_download_result,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_download_rocrate",
      "title": "Generic for downloading a history as an RO-Crate",
      "topics": [
        "galaxy_download_rocrate",
        "galaxy_download_rocrate,character-method",
        "galaxy_download_rocrate,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_get_file_info",
      "title": "Get information for one or more Galaxy datasets",
      "topics": [
        "galaxy_get_file_info"
      ]
    },
    {
      "page": "galaxy_get_tool",
      "title": "Retrieve detailed metadata for a Galaxy tool",
      "topics": [
        "galaxy_get_tool"
      ]
    },
    {
      "page": "galaxy_get_tool_id",
      "title": "Retrieve Galaxy tool IDs by name",
      "topics": [
        "galaxy_get_tool_id"
      ]
    },
    {
      "page": "galaxy_get_workflow",
      "title": "Receive workflow metadata from the API",
      "topics": [
        "galaxy_get_workflow"
      ]
    },
    {
      "page": "galaxy_get_workflow_inputs",
      "title": "Retrieve input definitions for a Galaxy workflow",
      "topics": [
        "galaxy_get_workflow_inputs"
      ]
    },
    {
      "page": "galaxy_has_key",
      "title": "Check whether a Galaxy API key is available",
      "topics": [
        "galaxy_has_key"
      ]
    },
    {
      "page": "galaxy_history_size",
      "title": "Galaxy history size Get the disk usage / size of a Galaxy history",
      "topics": [
        "galaxy_history_size"
      ]
    },
    {
      "page": "galaxy_initialize",
      "title": "Create a new Galaxy history",
      "topics": [
        "galaxy_initialize",
        "galaxy_initialize,Galaxy-method",
        "galaxy_initialize,missing-method"
      ]
    },
    {
      "page": "galaxy_list_files",
      "title": "List all files (datasets) in a Galaxy history",
      "topics": [
        "galaxy_list_files",
        "galaxy_list_files,character-method",
        "galaxy_list_files,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_list_histories",
      "title": "List Galaxy histories (name and history id)",
      "topics": [
        "galaxy_list_histories"
      ]
    },
    {
      "page": "galaxy_list_invocations",
      "title": "List workflow invocations for a given workflow",
      "topics": [
        "galaxy_list_invocations"
      ]
    },
    {
      "page": "galaxy_list_tools",
      "title": "List tools installed on a Galaxy instance",
      "topics": [
        "galaxy_list_tools"
      ]
    },
    {
      "page": "galaxy_list_workflows",
      "title": "List workflows available to the user",
      "topics": [
        "galaxy_list_workflows"
      ]
    },
    {
      "page": "galaxy_poll_tool",
      "title": "Generic for galaxy_poll_tool",
      "topics": [
        "galaxy_poll_tool",
        "galaxy_poll_tool,character-method",
        "galaxy_poll_tool,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_poll_workflow",
      "title": "Generic for polling workflows",
      "topics": [
        "galaxy_poll_workflow",
        "galaxy_poll_workflow,character-method",
        "galaxy_poll_workflow,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_print_tool_inputs",
      "title": "Print tool inputs",
      "topics": [
        "galaxy_print_tool_inputs"
      ]
    },
    {
      "page": "galaxy_run_tool",
      "title": "Generic run tool",
      "topics": [
        "galaxy_run_tool",
        "galaxy_run_tool,character-method",
        "galaxy_run_tool,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_set_credentials",
      "title": "Set Galaxy connection parameters for the current R session",
      "topics": [
        "galaxy_set_credentials"
      ]
    },
    {
      "page": "galaxy_start_workflow",
      "title": "Generic start workflow",
      "topics": [
        "galaxy_start_workflow",
        "galaxy_start_workflow,character-method",
        "galaxy_start_workflow,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_upload_ftp",
      "title": "Generic upload ftp",
      "topics": [
        "galaxy_upload_ftp",
        "galaxy_upload_ftp,character-method",
        "galaxy_upload_ftp,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_upload_https",
      "title": "Generic upload file with https",
      "topics": [
        "galaxy_upload_https",
        "galaxy_upload_https,character-method",
        "galaxy_upload_https,Galaxy-method"
      ]
    },
    {
      "page": "Galaxy-class",
      "title": "Galaxy session object",
      "topics": [
        "Galaxy-class"
      ]
    }
  ],
  "_readme": "https://github.com/julfrey/galaxyr/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "curl",
    "httr",
    "jsonlite",
    "mime",
    "openssl",
    "R6",
    "sys"
  ],
  "_score": 4.431363764158988,
  "_indexed": true,
  "_nocasepkg": "galaxyr",
  "_universes": [
    "julfrey"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-11-03T10:24:57.000Z",
      "distro": "resolute",
      "commit": "23af5575091f01359d46df2b8e076b937cd9eac6",
      "fileid": "https://r2.ropensci.org/52a0f7a51fbf408d13cb5bcffb35ea49e2937502805bed200a81611ef9145361",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/41618445549"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-11-03T10:25:05.000Z",
      "distro": "resolute",
      "commit": "23af5575091f01359d46df2b8e076b937cd9eac6",
      "fileid": "https://r2.ropensci.org/5f291f71066c9a7ac2c3dfafb69c67f9ff7de8e3b253a52bc95d6921ad15d78a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/41618445549"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.2",
      "date": "2026-11-03T11:35:36.000Z",
      "commit": "23af5575091f01359d46df2b8e076b937cd9eac6",
      "fileid": "https://r2.ropensci.org/70581bb61be2f487040c9c88dfcba3d839107e483e70c5805ba858e0747b5ace",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/41618445549"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "0.1.2",
      "date": "2026-11-03T11:31:37.000Z",
      "commit": "23af5575091f01359d46df2b8e076b937cd9eac6",
      "fileid": "https://r2.ropensci.org/5360123749a3ea331bcd8add5d04453d3cc3251020c4297299522e491a1eee2f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/41618445549"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.2",
      "date": "2026-11-03T10:25:06.000Z",
      "commit": "23af5575091f01359d46df2b8e076b937cd9eac6",
      "fileid": "https://r2.ropensci.org/9a474fc2fb080c651c62d41c998e8c45993d60a8961e18a256f4c68dd471068a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/41618445549"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-11-03T10:24:14.000Z",
      "commit": "23af5575091f01359d46df2b8e076b937cd9eac6",
      "fileid": "https://r2.ropensci.org/0a00bb8747d8e2af38672a219e336b737967464004af8c4dbe739767471485e6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/41618445549"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-11-03T10:24:30.000Z",
      "commit": "23af5575091f01359d46df2b8e076b937cd9eac6",
      "fileid": "https://r2.ropensci.org/87730e91ebac49859aeb6cd44f4fc1a3867c8340a8d9d8d7017f15e71b1cc8d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/41618445549"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-11-03T10:24:30.000Z",
      "commit": "23af5575091f01359d46df2b8e076b937cd9eac6",
      "fileid": "https://r2.ropensci.org/68eebdc44812baa0e7aa3fbe75563a65ca3445c04bafa10811f3bb20f7bd13d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/41618445549"
    }
  ]
}