{
  "_id": "6a0f6607acfb0bcc41c5d330",
  "Package": "GalaxyR",
  "Title": "'Galaxy' API Implementation",
  "Version": "0.1.1",
  "Authors@R": "c(\nperson(\"Julian\", \"Frey\", email = \"julian.frey@wwd.uni-freiburg.de\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7895-702X\")),\nperson(\"Zoe\", \"Schindler\", email = \"zoe.schindler@wwd.uni-freiburg.de\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-2972-1920\"))\n)",
  "Description": "On 'Galaxy' platforms like 'Galaxy Europe'\n<https://usegalaxy.eu>, many tools and workflows can run\ndirectly on a high-performance computer. 'GalaxyR' connects R\nwith 'Galaxy' platforms API <https://usegalaxy.eu/api/docs> and\nallows credential management, uploading data, invoking\nworkflows or tools, checking their status, and downloading\nresults.",
  "URL": "https://github.com/JulFrey/GalaxyR",
  "BugReports": "https://github.com/JulFrey/GalaxyR/issues",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://julfrey.r-universe.dev",
  "Date/Publication": "2026-04-21 19:55:38 UTC",
  "RemoteUrl": "https://github.com/julfrey/galaxyr",
  "RemoteRef": "HEAD",
  "RemoteSha": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-21 09:59:06 UTC",
    "User": "root"
  },
  "Author": "Julian Frey [aut, cre] (ORCID: <https://orcid.org/0000-0001-7895-702X>),\nZoe Schindler [ctb] (ORCID: <https://orcid.org/0000-0003-2972-1920>)",
  "Maintainer": "Julian Frey <julian.frey@wwd.uni-freiburg.de>",
  "MD5sum": "5d7fe3790f624ed2ff38a3b1929b08b5",
  "_user": "julfrey",
  "_type": "src",
  "_file": "GalaxyR_0.1.1.tar.gz",
  "_fileid": "ffbe6f432e8e49bf7a958c4f5ec45eee6d4f4a34d614dcc66f19f2934f819f1d",
  "_filesize": 293539,
  "_sha256": "ffbe6f432e8e49bf7a958c4f5ec45eee6d4f4a34d614dcc66f19f2934f819f1d",
  "_created": "2026-05-21T09:59:06.000Z",
  "_published": "2026-05-21T20:07:35.125Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77258846079,
      "time": 107,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7132800738"
    },
    {
      "job": 77258845752,
      "time": 106,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7132800413"
    },
    {
      "job": 77258845952,
      "time": 156,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7132808922"
    },
    {
      "job": 77258845831,
      "time": 140,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7132803129"
    },
    {
      "job": 77258845487,
      "time": 164,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7132763592"
    },
    {
      "job": 77258845340,
      "time": 89,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7146033852"
    },
    {
      "job": 77258846016,
      "time": 85,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7132793020"
    },
    {
      "job": 77258845926,
      "time": 61,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7132785354"
    },
    {
      "job": 77258846041,
      "time": 62,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7132785826"
    }
  ],
  "_buildurl": "https://github.com/r-universe/julfrey/actions/runs/26218959474",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/julfrey/galaxyr",
  "_commit": {
    "id": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
    "author": "JulFrey <julian.frey@@posteo.de>",
    "committer": "JulFrey <julian.frey@@posteo.de>",
    "message": "solve merge\n\nMerge branch 'main' of https://github.com/JulFrey/GalaxyR\n\n# Conflicts:\n#\tR/2025-10-27_JF_R_Galaxy_functions.R\n",
    "time": 1776801338
  },
  "_maintainer": {
    "name": "Julian Frey",
    "email": "julian.frey@wwd.uni-freiburg.de",
    "login": "julfrey",
    "orcid": "0000-0001-7895-702X",
    "description": "",
    "uuid": 45684330
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    }
  ],
  "_owner": "julfrey",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 7
    },
    {
      "week": "2026-02",
      "n": 7
    },
    {
      "week": "2026-03",
      "n": 3
    },
    {
      "week": "2026-04",
      "n": 7
    },
    {
      "week": "2026-05",
      "n": 5
    },
    {
      "week": "2026-08",
      "n": 4
    },
    {
      "week": "2026-16",
      "n": 2
    },
    {
      "week": "2026-17",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "zoeschindler",
      "count": 10,
      "uuid": 59600387
    },
    {
      "user": "julfrey",
      "count": 8,
      "uuid": 45684330
    }
  ],
  "_userbio": {
    "uuid": 45684330,
    "type": "user",
    "name": "Julian Frey "
  },
  "_downloads": {
    "count": 487,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/GalaxyR"
  },
  "_devurl": "https://github.com/julfrey/galaxyr",
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GalaxyR.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/julfrey/galaxyr",
  "_realowner": "julfrey",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-02-04"
    },
    {
      "version": "0.1.1",
      "date": "2026-02-17"
    }
  ],
  "_exports": [
    "galaxy",
    "galaxy_delete_dataset",
    "galaxy_delete_datasets",
    "galaxy_download_result",
    "galaxy_download_rocrate",
    "galaxy_get_file_info",
    "galaxy_get_tool",
    "galaxy_get_tool_id",
    "galaxy_get_workflow",
    "galaxy_get_workflow_inputs",
    "galaxy_has_key",
    "galaxy_history_size",
    "galaxy_initialize",
    "galaxy_list_histories",
    "galaxy_list_invocations",
    "galaxy_list_tools",
    "galaxy_list_workflows",
    "galaxy_poll_tool",
    "galaxy_poll_workflow",
    "galaxy_run_tool",
    "galaxy_set_credentials",
    "galaxy_start_workflow",
    "galaxy_upload_ftp",
    "galaxy_upload_https"
  ],
  "_help": [
    {
      "page": "galaxy",
      "title": "Create a Galaxy session object",
      "topics": [
        "galaxy"
      ]
    },
    {
      "page": "galaxy_delete_dataset",
      "title": "Delete a Galaxy dataset by ID",
      "topics": [
        "galaxy_delete_dataset"
      ]
    },
    {
      "page": "galaxy_delete_datasets",
      "title": "Delete multiple Galaxy datasets by ID",
      "topics": [
        "galaxy_delete_datasets"
      ]
    },
    {
      "page": "galaxy_download_result",
      "title": "Generic for downloading files from a history",
      "topics": [
        "galaxy_download_result",
        "galaxy_download_result,character-method",
        "galaxy_download_result,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_download_rocrate",
      "title": "Generic for downloading a history as an RO-Crate",
      "topics": [
        "galaxy_download_rocrate",
        "galaxy_download_rocrate,character-method",
        "galaxy_download_rocrate,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_get_file_info",
      "title": "Get information for one or more Galaxy datasets",
      "topics": [
        "galaxy_get_file_info"
      ]
    },
    {
      "page": "galaxy_get_tool",
      "title": "Retrieve detailed metadata for a Galaxy tool",
      "topics": [
        "galaxy_get_tool"
      ]
    },
    {
      "page": "galaxy_get_tool_id",
      "title": "Retrieve Galaxy tool IDs by name",
      "topics": [
        "galaxy_get_tool_id"
      ]
    },
    {
      "page": "galaxy_get_workflow",
      "title": "Receive workflow metadata from the API",
      "topics": [
        "galaxy_get_workflow"
      ]
    },
    {
      "page": "galaxy_get_workflow_inputs",
      "title": "Retrieve input definitions for a Galaxy workflow",
      "topics": [
        "galaxy_get_workflow_inputs"
      ]
    },
    {
      "page": "galaxy_has_key",
      "title": "Check whether a Galaxy API key is available",
      "topics": [
        "galaxy_has_key"
      ]
    },
    {
      "page": "galaxy_history_size",
      "title": "Galaxy history size Get the disk usage / size of a Galaxy history",
      "topics": [
        "galaxy_history_size"
      ]
    },
    {
      "page": "galaxy_initialize",
      "title": "Create a new Galaxy history",
      "topics": [
        "galaxy_initialize",
        "galaxy_initialize,Galaxy-method",
        "galaxy_initialize,missing-method"
      ]
    },
    {
      "page": "galaxy_list_histories",
      "title": "List Galaxy histories (name and history id)",
      "topics": [
        "galaxy_list_histories"
      ]
    },
    {
      "page": "galaxy_list_invocations",
      "title": "List workflow invocations for a given workflow",
      "topics": [
        "galaxy_list_invocations"
      ]
    },
    {
      "page": "galaxy_list_tools",
      "title": "List tools installed on a Galaxy instance",
      "topics": [
        "galaxy_list_tools"
      ]
    },
    {
      "page": "galaxy_list_workflows",
      "title": "List workflows available to the user",
      "topics": [
        "galaxy_list_workflows"
      ]
    },
    {
      "page": "galaxy_poll_tool",
      "title": "Generic for galaxy_poll_tool",
      "topics": [
        "galaxy_poll_tool",
        "galaxy_poll_tool,character-method",
        "galaxy_poll_tool,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_poll_workflow",
      "title": "Generic for polling workflows",
      "topics": [
        "galaxy_poll_workflow",
        "galaxy_poll_workflow,character-method",
        "galaxy_poll_workflow,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_run_tool",
      "title": "Generic run tool",
      "topics": [
        "galaxy_run_tool",
        "galaxy_run_tool,character-method",
        "galaxy_run_tool,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_set_credentials",
      "title": "Set Galaxy connection parameters for the current R session",
      "topics": [
        "galaxy_set_credentials"
      ]
    },
    {
      "page": "galaxy_start_workflow",
      "title": "Generic start workflow",
      "topics": [
        "galaxy_start_workflow",
        "galaxy_start_workflow,character-method",
        "galaxy_start_workflow,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_upload_ftp",
      "title": "Generic upload ftp",
      "topics": [
        "galaxy_upload_ftp",
        "galaxy_upload_ftp,character-method",
        "galaxy_upload_ftp,Galaxy-method"
      ]
    },
    {
      "page": "galaxy_upload_https",
      "title": "Generic upload file with https",
      "topics": [
        "galaxy_upload_https",
        "galaxy_upload_https,character-method",
        "galaxy_upload_https,Galaxy-method"
      ]
    },
    {
      "page": "Galaxy-class",
      "title": "Galaxy session object",
      "topics": [
        "Galaxy-class"
      ]
    }
  ],
  "_readme": "https://github.com/julfrey/galaxyr/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "curl",
    "httr",
    "jsonlite",
    "mime",
    "openssl",
    "R6",
    "sys"
  ],
  "_score": 3.9030899869919438,
  "_indexed": true,
  "_nocasepkg": "galaxyr",
  "_universes": [
    "julfrey"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-21T10:00:57.000Z",
      "distro": "noble",
      "commit": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
      "fileid": "8d30a3db38e17bcdd8b4eda66530cb9e593ce315cb4d5daa585c2f017523e4b8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/26218959474"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-21T10:00:57.000Z",
      "distro": "noble",
      "commit": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
      "fileid": "e180bc33e41d3659c414072516d4e99913b50c1fd8b2f8f4df890580c9944c66",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/26218959474"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-21T10:01:23.000Z",
      "commit": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
      "fileid": "7f2f2fe0e4396c97094dd1faac5e330e4ca5c65cd6f218afcaae0cf2054bd6a5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/26218959474"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-21T10:01:07.000Z",
      "commit": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
      "fileid": "ad8f9562b8f68fbd722f13a946c36ab94be35a4546278c569ae3627041bc170b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/26218959474"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-05-21T20:07:19.000Z",
      "commit": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
      "fileid": "c2ea8d6f5e921cfddcbe9fabc84897916d338b04520f7b83a86ae255b092c59b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/26218959474"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-21T10:00:30.000Z",
      "commit": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
      "fileid": "d1d1e7bf1522c3b9eafdbe81578eda2ef99009bb68ce2d90649aea2d9c917155",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/26218959474"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-21T10:00:08.000Z",
      "commit": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
      "fileid": "723e22258b639fe2704346625fd75492f7364fe39ad8d9a8b269d65ca39f7bf8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/26218959474"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-21T10:00:09.000Z",
      "commit": "97f52abe1991e788063d930ba05ca155fbfe4dfb",
      "fileid": "791a07221af349408661e2367875f4983749a3256c7433bca0bb145816083571",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julfrey/actions/runs/26218959474"
    }
  ]
}